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Courses

Methods in Bioinformatics
Lecture 1-3: Introduction to Python

Python Basics Part 1: Variables, For loops, If statements [go to Google Colab]

Python Basics Part 2: Functions and objects [go to Google Colab]

Python Basics Part 3: Pandas, Numpy and Dataframes [go to Google Colab]

Python Basics Part 4: Plotting data with matplotlib [go to Google Colab]

Excercise 1: Analyse E. coli growth curves [go to Google Colab]

Growth data of 12 E. coli strains:

Excercise 2: Metabolome data of E. coli [go to Google Colab]

Targeted metabolomics data of E. coli in 19 conditions:

Dataset 1

Dataset 2

Lecture 4: CRISPR screens

Part 1: Read fastq files  [go to Google Colab]

Part 2: Analyse Data from CRISPR screen  [go to Google Colab]

This is the CRISPR library and data:

And info about metabolic genes: 

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